[GmRepo] Bacteria associated to Irritable Bowel Syndrome

This is a novel way of detecting patterns, instead of looking at the values, we use the rare bacteria to determine if the rate bacteria shifts matches. The table below does not show the amount, but how often a bacteria is seen in samples with various conditions. In general, if it is seen less, it is likely that the percentile values seen will be lower. If it seen more, than the percentile values will likely be higher than average.

If you are not logged in, you will see the full list. If you are logged in, then it is filtered to the sample you have selected. The data comes from 72,000+ samples on GMrepo : a curated database of human gut metagenomes

This is an experimental analysis

These are not predictive (chicken and egg questions). Values over 66% or below 33% that are a match may be a concern

Rank Name Irritable Bowel Syndrome
  genus Acetobacter   Less
  genus Acetobacterium   More
  genus Achromobacter   Less
  genus Acidobacterium   Less
  genus Actinomyces   Less
  genus Actinomycetospora   More
  genus Adlercreutzia   Less
  genus Aeromonas   More
  genus Aerosphaera   Less
  genus Agrobacterium   Less
  genus Alicycliphilus   Less
  genus Allochromatium   More
  genus Alloiococcus   Less
  genus Alloscardovia   More
  genus Aminobacter   More
  genus Aminobacterium   More
  genus Ammoniphilus   Less
  genus Anaerobiospirillum   More
  genus Anaeroglobus   Less
  genus Anaeroplasma   Less
  genus Aquimarina   More
  genus Arthromitus   Less
  genus Arthrospira   Less
  genus Asteroleplasma   More
  genus Babela   Less
  genus Bartonella   Less
  genus Basfia   Less
  genus Bifidobacterium   Less
  genus Bordetella   Less
  genus Bradyrhizobium   Less
  genus Brevibacillus   Less
  genus Brevibacterium   Less
  genus Brochothrix   Less
  genus Burkholderia   Less
  genus Butyrivibrio   Less
  genus Caldanaerobacter   Less
  genus Caldicellulosiruptor   Less
  genus Catenibacterium   Less
  genus Cellulophaga   Less
  genus Cellulosilyticum   Less
  genus Chlorobium   Less
  genus Chromobacterium   More
  genus Chroococcus   Less
  genus Chthonomonas   Less
  genus Citrobacter   More
  genus Clostridioides   Less
  genus Cocleimonas   More
  genus Conexibacter   Less
  genus Coprobacillus   Less
  genus Coriobacterium   Less
  genus Corynebacterium   Less
  genus Cryptobacterium   Less
  genus Dehalobacter   Less
  genus Deinococcus   Less
  genus Denitrovibrio   Less
  genus Desulfatiglans   Less
  genus Desulfitobacterium   Less
  genus Desulfococcus   Less
  genus Desulfomonile   Less
  genus Dethiosulfatibacter   More
  genus Devosia   Less
  genus Dietzia   Less
  genus Dolosigranulum   Less
  genus Dyadobacter   Less
  genus Elusimicrobium   Less
  genus Enterococcus   Less
  genus Enterovibrio   Less
  genus Erwinia   Less
  genus Exiguobacterium   Less
  genus Flavonifractor   Less
  genus Gallibacterium   Less
  genus Gallionella   Less
  genus Gemmiger   More
  genus Geofilum   More
  genus Globicatella   More
  genus Hafnia   More
  genus Haliscomenobacter   Less
  genus Halomonas   Less
  genus Halothermothrix   Less
  genus Halothiobacillus   Less
  genus Heliobacterium   Less
  genus Heliophilum   More
  genus Herbaspirillum   Less
  genus Herminiimonas   Less
  genus Hespellia   More
  genus Hirschia   Less
  genus Hungatella   Less
  genus Hyphomonas   Less
  genus Ignatzschineria   Less
  genus Insolitispirillum   More
  genus Jannaschia   Less
  genus Janthinobacterium   Less
  genus Jeotgalicoccus   Less
  genus Kingella   Less
  genus Koribacter   Less
  genus Kribbella   Less
  genus Laribacter   Less
  genus Lawsonia   Less
  genus Legionella   More
  genus Lentisphaera   More
  genus Leucobacter   Less
  genus Megamonas   Less
  genus Meiothermus   Less
  genus Mesorhizobium   Less
  genus Methanobrevibacter   Less
  genus Methanomassiliicoccus   Less
  genus Methylobacterium   Less
  genus MLOs   Less
  genus Moraxella   Less
  genus Morganella   Less
  genus Mycobacterium   Less
  genus Mycoplasma   Less
  genus Nesterenkonia   Less
  genus Nisaea   Less
  genus Nitrosospira   Less
  genus Niveispirillum   More
  genus Nocardia   Less
  genus Nocardiopsis   More
  genus Nonlabens   More
  genus Oceanobacillus   Less
  genus Ochrobactrum   More
  genus Opitutus   Less
  genus Owenweeksia   Less
  genus Oxalicibacterium   More
  genus Oxalophagus   Less
  genus Paeniclostridium   Less
  genus Pandoraea   Less
  genus Pantoea   Less
  genus Paraburkholderia   Less
  genus Paracoccus   Less
  genus Pelobacter   Less
  genus Peptostreptococcus   Less
  genus Phascolarctobacterium   Less
  genus Porphyrobacter   Less
  genus Prochlorothrix   More
  genus Propionibacterium   Less
  genus Propionispira   Less
  genus Propionivibrio   More
  genus Proteus   Less
  genus Protochlamydia   Less
  genus Providencia   More
  genus Pseudoalteromonas   Less
  genus Pseudothermotoga   Less
  genus Psychrobacter   Less
  genus Ralstonia   Less
  genus Raoultella   Less
  genus Riemerella   Less
  genus Rivularia   More
  genus Rothia   More
  genus Rudaea   Less
  genus Rummeliibacillus   More
  genus Runella   Less
  genus Sedimenticola   Less
  genus Sinorhizobium   Less
  genus Solibacillus   Less
  genus Sphaerochaeta   Less
  genus Sphaerotilus   More
  genus Sphingomonas   Less
  genus Sphingosinicella   Less
  genus Sporocytophaga   Less
  genus Sporotomaculum   More
  genus Stenotrophomonas   More
  genus Streptobacillus   Less
  genus Succinispira   More
  genus Succinivibrio   Less
  genus Sulfobacillus   Less
  genus Sulfuricella   Less
  genus Synechococcus   More
  genus Synergistes   Less
  genus Syntrophobacter   More
  genus Tepidimonas   Less
  genus Terribacillus   Less
  genus Thauera   Less
  genus Thermacetogenium   Less
  genus Thermoanaerobacter   Less
  genus Thermodesulfobium   Less
  genus Thermus   Less
  genus Thioalkalivibrio   Less
  genus Thiobacillus   Less
  genus Thiocystis   Less
  genus Thiothrix   More
  genus Treponema   Less
  genus Varibaculum   Less
  genus Veillonella   Less
  genus Verminephrobacter   Less
  genus Vibrio   Less
  genus Vogesella   Less
  genus Xanthomonas   Less
  genus Xylanimonas   More
  genus Yersinia   More
  species [Bacteroides] pectinophilus   Less
  species [Brevibacterium] frigoritolerans   Less
  species [Clostridium] sporosphaeroides   Less
  species [Eubacterium] tenue   Less
  species [Mannheimia] succiniciproducens   Less
  species [Ruminococcus] lactaris   Less
  species 3I1B110   Less
  species Absiella tortuosum   More
  species Acetobacter albidus Kondo and Ameyama 1958   Less
  species Acetobacter pasteurianus   Less
  species Acetobacterium bakii   More
  species Acetobacterium woodii   Less
  species Achromobacter xylosoxidans   Less
  species Acidobacterium capsulatum   Less
  species Acinetobacter baumannii   Less
  species Acinetobacter gerneri   More
  species Acinetobacter haemolyticus   More
  species Acinetobacter johnsonii   More
  species Acinetobacter junii   More
  species Acinetobacter lwoffii   Less
  species Acinetobacter pittii   Less
  species Acinetobacter radioresistens   Less
  species Acinetobacter tjernbergiae   More
  species Acinetobacter towneri   Less
  species Actinobacillus succinogenes   Less
  species Actinomyces graevenitzii   Less
  species Actinomyces naeslundii   Less
  species Actinomyces radicidentis   Less
  species Adlercreutzia equolifaciens   Less
  species Aerococcus christensenii   More
  species Aerococcus urinae   Less
  species Aerococcus urinaeequi   More
  species Aeromonas aquariorum   More
  species Aerosphaera taetra   Less
  species Aggregatibacter actinomycetemcomitans   More
  species Alicycliphilus denitrificans   Less
  species Alkalihalobacillus berkeleyi   Less
  species Alkalihalobacillus oshimensis   More
  species Alkaliphilus oremlandii   Less
  species Alloiococcus otitis   Less
  species Alloscardovia omnicolens   More
  species Alteromonas macleodii   Less
  species Aminobacter aminovorans   More
  species Aminobacterium colombiense   More
  species Anaerobiospirillum thomasii   More
  species Anaerococcus octavius   Less
  species Anaeroglobus geminatus   Less
  species Anaeromyxobacter dehalogenans   Less
  species Anaeroplasma bactoclasticum   Less
  species Anaerostipes hadrus   Less
  species Arthromitus sp. SFB-mouse   Less
  species Arthrospira platensis   Less
  species AS 4.1438   More
  species Asteroleplasma anaerobium   More
  species ATCC 15444   Less
  species ATCC 23444   Less
  species ATCC 25714   More
  species ATCC 29858   Less
  species ATCC 31418   More
  species ATCC 35250   More
  species ATCC 43273   Less
  species ATCC 43513   More
  species ATCC 49758   Less
  species ATCC 49814   Less
  species ATCC 51573   More
  species ATCC 700332   More
  species ATCC BAA-1233   Less
  species ATCC BAA-63   Less
  species Bacillus tuberculosis gallinarum Sternberg 1892   Less
  species Bacillus vanillea Chen et al. 2015   More
  species Bacteroides clarus   Less
  species Bacteroides heparinolyticus   More
  species Bacteroides reticulotermitis   Less
  species Bartonella clarridgeiae   Less
  species Bifidobacterium angulatum   Less
  species Bifidobacterium asteroides   Less
  species Bifidobacterium bifidum   Less
  species Bifidobacterium breve   Less
  species Bifidobacterium catenulatum   Less
  species Bifidobacterium dentium   Less
  species Bifidobacterium longum   Less
  species Bifidobacterium pseudolongum   Less
  species Bifidobacterium saguini   Less
  species Bifidobacterium scardovii   Less
  species Brachyspira pilosicoli   Less
  species Bradyrhizobium elkanii   Less
  species Brevibacillus brevis   Less
  species Brevibacterium mcbrellneri   Less
  species Brevibacterium ravenspurgense   Less
  species Brevundimonas mediterranea   More
  species Brucella anthropi   More
  species Burkholderia cepacia   Less
  species Butyrivibrio crossotus   Less
  species CAIM 516   Less
  species Caldanaerobacter subterraneus   Less
  species Caldicellulosiruptor owensensis   More
  species Calotaxis gracile PCC 7367   Less
  species Calothrix sp. ATCC 29111   More
  species Campylobacter jejuni   Less
  species Campylobacter ureolyticus   Less
  species Candidatus Babela massiliensis   Less
  species Candidatus Koribacter versatilis   Less
  species Candidatus Liberibacter americanus   More
  species Candidatus Protochlamydia amoebophila   Less
  species Candidatus Ruthia magnifica Newton et al. 2007   More
  species Capnocytophaga sp.   Less
  species Capnocytophaga sputigena   Less
  species Catenibacterium mitsuokai   Less
  species Caulobacter vibrioides   Less
  species CCUG 35957   Less
  species Cellulophaga tyrosinoxydans   More
  species Cellulosilyticum lentocellum   Less
  species Cellulosilyticum ruminicola   Less
  species Chromobacterium janthinum (Zopf) Ford 1927   More
  species Chryseobacterium carnipullorum   More
  species Chryseobacterium gallinarum   More
  species Chryseobacterium hispalense   Less
  species Chthonomonas calidirosea   Less
  species CIP 106858   Less
  species CIP 108913   More
  species Citrobacter freundii   More
  species Citrobacter koseri   More
  species Clostridium aceticum   More
  species Clostridium butyricum   Less
  species Clostridium celatum   Less
  species Clostridium colicanis   Less
  species Clostridium difficile   Less
  species Clostridium formicaceticum   More
  species Clostridium perfringens   Less
  species Clostridium putrefaciens   More
  species Clostridium sp. ATCC BAA-442   Less
  species Clostridium sp. BNL1100   More
  species Clostridium sp. SY8519   Less
  species Clostridium subterminale   Less
  species Clostridium tetani   Less
  species Cocleimonas flava   More
  species Companilactobacillus paralimentarius   Less
  species Conexibacter woesei   Less
  species Coriobacterium glomerans   Less
  species Corynebacterium accolens   Less
  species Corynebacterium appendicis   Less
  species Corynebacterium bovis   Less
  species Corynebacterium caspium   Less
  species Corynebacterium coyleae   Less
  species Corynebacterium genitalium   Less
  species Corynebacterium glaucum   Less
  species Corynebacterium imitans   Less
  species Corynebacterium kroppenstedtii   Less
  species Corynebacterium lipophiloflavum   Less
  species Corynebacterium propinquum   Less
  species Corynebacterium pseudodiphtheriticum   Less
  species Corynebacterium sp. ATCC 6931   Less
  species Corynebacterium sphenisci   Less
  species Corynebacterium timonense   Less
  species Corynebacterium tuscaniense   Less
  species Corynebacterium xerosis   Less
  species Cryptobacterium curtum   Less
  species Curtobacterium flaccumfaciens   More
  species Cutibacterium acnes   Less
  species Cutibacterium granulosum   Less
  species Cyanobacteria bacterium Yellowstone A-Prime   More
  species Cyanothece sp. ATCC 29141   More
  species Dehalobacter restrictus   More
  species Dehalobacter sp. CF   Less
  species Dehalobacter sp. DCA   Less
  species Denitrovibrio acetiphilus   Less
  species Desulfatiglans anilini   Less
  species Desulfitobacterium dichloroeliminans   Less
  species Desulfitobacterium hafniense   Less
  species Desulfofundulus kuznetsovii   Less
  species Desulfomonile tiedjei   Less
  species Desulfosporosinus acidiphilus   Less
  species Dethiosulfatibacter aminovorans   More
  species Dietzia maris   Less
  species Dolosigranulum pigrum   Less
  species Dorea longicatena   Less
  species DSM 16632   More
  species DSM 19859   More
  species DSM 21441   Less
  species DSM 22362   More
  species DSM 24301   More
  species DSM 4741   More
  species DSM 9885   Less
  species Dyadobacter fermentans   Less
  species Dysgonomonas capnocytophagoides   Less
  species Dysgonomonas gadei   More
  species Dysgonomonas hofstadii   More
  species Dysgonomonas mossii   Less
  species Elusimicrobium minutum   Less
  species Enterocloster clostridioformis   Less
  species Enterococcus columbae   Less
  species Enterococcus durans   Less
  species Enterococcus faecalis   Less
  species Enterococcus faecium   Less
  species Enterococcus gilvus   Less
  species Eubacterium limosum   Less
  species Filifactor alocis   Less
  species Flavihumibacter cheonanensis   Less
  species Flavobacterium akiainvivens   More
  species Flavobacterium aquatile   Less
  species Flavobacterium columnare   More
  species Flavobacterium subsaxonicum   More
  species Flavonifractor plautii   Less
  species Fructilactobacillus sanfranciscensis   Less
  species Fusobacterium gonidiaformans   Less
  species Fusobacterium necrogenes   Less
  species Gallionella capsiferriformans   Less
  species gamma proteobacterium HdN1   Less
  species Geitlerinema sp. ATCC 29126   More
  species Gemella morbillorum   Less
  species Gemmiger formicilis   More
  species Geofilum rubicundum   More
  species Gleimia europaea   Less
  species Globicatella sanguinis   More
  species Haemophilus haemolyticus   Less
  species Hafnia alvei   More
  species Haliscomenobacter hydrossis   Less
  species Halothermothrix orenii   Less
  species Halothiobacillus neapolitanus   Less
  species Hathewaya proteolytica   More
  species Helicobacter pametensis   Less
  species Helicobacter pullorum   Less
  species Helicobacter trogontum   Less
  species Heliomicrobium modesticaldum   Less
  species Heliophilum fasciatum   More
  species Herbaspirillum seropedicae   Less
  species Herminiimonas arsenicoxydans   Less
  species Hespellia stercorisuis   More
  species Holzapfelia floricola   More
  species Hungatella hathewayi   Less
  species HUT 6613   Less
  species Insolitispirillum peregrinum   More
  species Jannaschia sp. CCS1   Less
  species Jeotgalicoccus pinnipedialis   Less
  species Kingella oralis   Less
  species Kocuria rhizophila   Less
  species Kribbella flavida   Less
  species Lachnoclostridium phytofermentans   Less
  species Lacticaseibacillus brantae   More
  species Lacticaseibacillus paracasei   Less
  species Lactiplantibacillus pentosus   More
  species Lactobacillus delbrueckii   Less
  species Lactobacillus gasseri   Less
  species Lactobacillus jensenii   More
  species Lactococcus garvieae   Less
  species Laribacter hongkongensis   Less
  species Lawsonia intracellularis   Less
  species Legionella lansingensis   More
  species Lentilactobacillus parabuchneri   Less
  species Leptotrichia shahii   Less
  species Leucobacter chromiiresistens   Less
  species Leuconostoc fallax   More
  species Ligilactobacillus murinus   More
  species Ligilactobacillus salivarius   Less
  species Limosilactobacillus ingluviei   Less
  species Limosilactobacillus oris   Less
  species LMG:2665   Less
  species Lysinibacillus macroides   Less
  species Mammaliicoccus sciuri   More
  species Marinomonas polaris   Less
  species Marinomonas posidonica   More
  species MCC 2795   Less
  species Megamonas hypermegale   Less
  species Megasphaera micronuciformis   Less
  species Meiothermus silvanus   Less
  species Mesorhizobium loti   Less
  species Methanobrevibacter smithii   Less
  species Microbacterium paraoxydans   More
  species Micrococcus radioproteolyticus Kobatake et al. 1973   Less
  species Moorella mulderi   Less
  species Moraxella catarrhalis   Less
  species Moraxella nonliquefaciens   Less
  species Moraxella osloensis   Less
  species Morganella morganii   Less
  species Mycoplasmopsis pulmonis   More
  species Neisseria bacilliformis   More
  species Neisseria mucosa   More
  species Neisseria weaveri   More
  species Nitrosospira multiformis   Less
  species Niveispirillum irakense   More
  species Nocardioides oleivorans   Less
  species Nonlabens spongiae   More
  species Oceanobacillus iheyensis   Less
  species Onion yellows phytoplasma   Less
  species Opitutus terrae   Less
  species Owenweeksia hongkongensis   Less
  species Oxalophagus oxalicus   Less
  species Paenibacillus anaericanus   More
  species Paenibacillus durus   Less
  species Paenibacillus larvae   Less
  species Paenibacillus odorifer   More
  species Paraburkholderia fungorum   Less
  species Paracholeplasma brassicae   Less
  species Paracoccus aminophilus   Less
  species Paracoccus yeei   Less
  species Parageobacillus thermoglucosidasius   More
  species Paraprevotella xylaniphila   More
  species Parasutterella secunda   More
  species Pasteurella oralis   More
  species Pediococcus acidilactici   Less
  species Pediococcus claussenii   Less
  species Pedobacter heparinus   Less
  species Pedobacter sp.   More
  species Peptoniphilus harei   Less
  species Peptoniphilus ivorii   Less
  species Peptoniphilus methioninivorax   Less
  species Peptoniphilus stercorisuis   Less
  species Peptoniphilus tyrrelliae   Less
  species Peptostreptococcus anaerobius   Less
  species Peribacillus muralis   More
  species Peribacillus psychrosaccharolyticus   More
  species Porphyromonas circumdentaria   Less
  species Prevotella baroniae   More
  species Prevotella dentasini   Less
  species Prevotella micans   Less
  species Prevotella oryzae   More
  species Prevotella pallens   Less
  species Prevotella pleuritidis   More
  species Prochlorothrix hollandica   More
  species Propionibacterium acidifaciens   More
  species Propionibacterium freudenreichii   Less
  species Propionivibrio dicarboxylicus   More
  species Proteus hauseri   Less
  species Proteus mirabilis   Less
  species Proteus vulgaris   Less
  species Providencia alcalifaciens   Less
  species Providencia sneebia   More
  species Providencia stuartii   More
  species Pseudomonas amygdali   Less
  species Pseudomonas chlororaphis   More
  species Pseudomonas citronellolis   More
  species Pseudomonas coronafaciens   Less
  species Pseudomonas fluorescens   More
  species Pseudomonas monteilii   More
  species Pseudomonas oryzihabitans   Less
  species Ralstonia insidiosa   Less
  species Ralstonia pickettii   Less
  species Ralstonia solanacearum   Less
  species Raoultella ornithinolytica   Less
  species Roseomonas mucosa   Less
  species Rothia aeria   Less
  species Rothia mucilaginosa   More
  species Rudaea cellulosilytica   Less
  species Rummeliibacillus pycnus   More
  species Schaalia radingae   Less
  species Schaalia suimastitidis   Less
  species secondary endosymbiont of Ctenarytaina eucalypti   More
  species Sediminispirochaeta bajacaliforniensis   Less
  species Sediminispirochaeta smaragdinae   Less
  species Serratia sp. ATCC 39006   More
  species Shewanella putrefaciens   Less
  species Solibacillus silvestris   Less
  species Sphaerochaeta pleomorpha   Less
  species Sphaerotilus natans   More
  species Sphingobacterium mizutaii   Less
  species Sphingobium yanoikuyae   Less
  species Sphingomonas jaspsi   Less
  species Sphingomonas sp. MM-1   More
  species Sphingopyxis alaskensis   Less
  species Spirochaeta africana   Less
  species Spiroplasma chrysopicola   Less
  species Spiroplasma culicicola   Less
  species Spiroplasma syrphidicola   Less
  species Sporocytophaga myxococcoides   Less
  species Sporotomaculum hydroxybenzoicum   More
  species Staphylococcus intermedius   More
  species Staphylococcus saprophyticus   Less
  species Stenotrophomonas maltophilia   More
  species Stenotrophomonas pavanii   More
  species Stenotrophomonas terrae   More
  species strain NLEP 97-1090   Less
  species Streptococcus gallolyticus   Less
  species Streptococcus lutetiensis   Less
  species Streptococcus parasanguinis   More
  species Succinispira mobilis   More
  species Succinivibrio dextrinosolvens   Less
  species Sulfuricella denitrificans   Less
  species Synechococcus sp. WH 8102   More
  species Syntrophotalea acetylenica   Less
  species Tepidimonas arfidensis   Less
  species Tetragenococcus muriaticus   More
  species Thauera selenatis   Less
  species Thauera sp. MZ1T   Less
  species Thermacetogenium phaeum   Less
  species Thermodesulfobium narugense   Less
  species Thermus scotoductus   Less
  species Thiomonas bhubaneswarensis   Less
  species Thiothrix eikelboomii   More
  species Tissierella creatinini   Less
  species Tissierella creatinophila   Less
  species Treponema brennaborense   Less
  species Treponema denticola   More
  species Treponema socranskii   More
  species Treponema succinifaciens   Less
  species Ureibacillus suwonensis   More
  species Varibaculum cambriense   Less
  species Veillonella criceti   Less
  species Veillonella parvula   Less
  species Veillonella ratti   Less
  species Verminephrobacter eiseniae   Less
  species Virgibacillus salexigens   More
  species Viridibacillus arvi   More
  species Vogesella indigofera   Less
  species Weissella confusa   Less
  species Winkia neuii   Less
  species Wolbachia endosymbiont Drosophila simulans strain Riverside   More
  species Xanthomonas campestris   More
  species Xanthomonas vesicatoria   Less
  species Xylanimonas cellulosilytica   More
  species Yersinia pestis   More
  strain Enorma massiliensis phI   Less

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